DreEX6050528 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30536790-30538031:+
Coord C1 exon
chr8:30536790-30536974
Coord A exon
chr8:30537600-30537704
Coord C2 exon
chr8:30537846-30538031
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCACTCTGGACATTCCCAGTCG
3' ss Score
3.47
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ACATCCCGTTTAGTGGGACTCCACCTCCAGCTTATGTTTACGATGGCGATCGCGGGGATGACCAGCGTTTGCAGTCTGACATTGTGTCCTACTCTGACGACCCTCTGTTCTCTCCTCGCCTTCACCCGAAGGGCCGAAGCATTAGAGAGACTCCTTCATCGGGGTCCCCAGAGTCTACTAAATCA
Seq A exon
TCGGAACTAGATGCGGAAAAAGGCCTGGAGATGAGGAAATGGGTGTTATCTGGGATCCTGGCCAGTGAAGAGGCCTATCTCAGCCACTTGGAGGCGCTCTTAGTG
Seq C2 exon
CCCATGAAGCCCCTGAAAGCTGCTGCCACCACCTCTCAGCCCATGCTAACCCTCCAGCAGATAGAAACCATTTTCTTCAATGTGCCTGAGCTCCATGAGATACACAAAGACTTTTATGATGGTCTGTTACCCAGAGTGCAACAGTGGAGCAACCGCCAATGTGTGGGCGACCTCTTTCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'3-6,'3-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.8=57.1)
C2:
PF0062115=RhoGEF=FE(32.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCTACTCTGACGACCC
R:
TCCACTGTTGCACTCTGGGTA
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]