BtaEX6074114 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73715504-73719653:-
Coord C1 exon
chr17:73719513-73719653
Coord A exon
chr17:73716548-73716669
Coord C2 exon
chr17:73715504-73715672
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCGCCCTGCCCACAGCAC
3' ss Score
10.18
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GACTTGCTGAAACACACGCCCCCCAGCCACCCTGACCACCCGCTGCTGCAGGACGCCCTCCGCATCTCGCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAGAAGGGAGAG
Seq A exon
CACCGGCAGCTGCTCAAGGACAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGGCACGTCTTCCTCTTCACAGACCTGCTGCTCTGCACCAAGCTCAAGAAGCAGAGCGGGGG
Seq C2 exon
CAAAGCCCAGCAGTACGACTGCAAGTGGTACATCCCGCTCACGGACCTCAGCTTCCAGACGGTGGACGAGTCGGAGGCTGCACCCAGCATCCCTCTGGTGCTGGACGAGGAGCTGGATGCCATGAAGGTCAAGATCTCCCAGATCAAGAGTGACATCCAGAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
A:
PF0016924=PH=FE(24.4=100)
C2:
PF0016924=PH=FE(34.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCATCTCGCAGAACTTC
R:
TGGATGTCACTCTTGATCTGGGA
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]