GgaEX6014158 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8598894-8609273:-
Coord C1 exon
chr15:8609133-8609273
Coord A exon
chr15:8599903-8600024
Coord C2 exon
chr15:8598894-8599062
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTGTTTTTCACCAGCAC
3' ss Score
9.2
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
Seq A exon
CACCGGCAGCTCCTGAAGGACAGCTTCATGGTGGAGCTCGTTGAGGGGGCTCGCAAACTACGTCACGTCTTTCTTTTTACTGATCTGTTCCTGTGTGCCAAGCTCAAGAAGCAGATTGGAGG
Seq C2 exon
AAAAAGCCAGCAGTATGACTGCAAATGGTACATCCCACTCACTGACCTTAGTTTCCAAATGGTGGATGAGTCCGAGGCAGTGCCCAACATCCCACTGGTACCTGATGAGGAACTGGATGCCATGAAGATCAAGATATCACAAATCAAGAATGATATCCAGCGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'23-17,'23-16,27-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
PF0016924=PH=FE(24.5=100)
C2:
PF0016924=PH=FE(34.4=100)
Main Skipping Isoform:
ENSGALT00000010819fB1047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAGCCACCCTGATCATC
R:
GGCATCCAGTTCCTCATCAGG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]