MmuEX6049015 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74608067-74617811:+
Coord C1 exon
chr10:74608067-74608207
Coord A exon
chr10:74616631-74616752
Coord C2 exon
chr10:74617643-74617811
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTCCATATTGTGCCCGTAGCAC
3' ss Score
8.18
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GACTTGCTAAAACACACCCCGTCCAGCCATCCCGACCATTCCCTGCTGCAAGACGCCCTCCGAATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGACAGTCCATGACGGTGAAAAAAGGAGAG
Seq A exon
CACCGGCAGCTGCTGAAGGACAGCTTTATGGTAGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAGCAAAGTGGAGG
Seq C2 exon
CAAAACCCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGATGAATTGGAGGCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCAAGAGCGACATCCAACGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
PF0016924=PH=FE(24.5=100)
C2:
PF0016924=PH=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTAAAACACACCCCGTCC
R:
CAGTTCCTCATCTGGCACCAG
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: