RnoEX0014488 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14452871-14461521:-
Coord C1 exon
chr20:14461381-14461521
Coord A exon
chr20:14453960-14454081
Coord C2 exon
chr20:14452871-14453039
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTCTACACCGTGCCCACAGCAC
3' ss Score
7.57
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GACTTGCTAAAGCACACTCCATCCAGCCATCCCGACCATTCCCTGCTGCAAGATGCCCTCCGCATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAAAAAGGAGAG
Seq A exon
CACCGGCAGCTGCTGAAGGATAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAACAAAGTGGAGG
Seq C2 exon
CAAAACCCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGACGAGTTGGAGGCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCAAGAGCGACATCCAACGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'11-12,'11-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
PF0016924=PH=FE(24.5=100)
C2:
PF0016924=PH=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCGCATCTCTCAGAACT
R:
TCTCTCGTTGGATGTCGCTCT
Band lengths:
253-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]