BtaEX6074465 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:359222-371023:-
Coord C1 exon
chr20:370888-371023
Coord A exon
chr20:363204-363301
Coord C2 exon
chr20:359222-359361
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCTTTCTCCTCAGGGC
3' ss Score
12.36
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTGCCACCAGGGCCAGTGGACATCGGCATCGTGGCCAAGTGTGACCCCTGCCTCTCCAGCCCGTGCAAGAACAACGGCACATGCAGCCAGGACCCCGTGGAGGGGCACCGCTGCGCCTGCTCCCACGGCTACAAG
Seq A exon
GGCAGAGACTGCACCGTGCCCATGAACACCTGCATTCAGAACCCCTGTCTGCACGGAGGCACCTGCCACCTGAGCGAGACCCACAAGGGTGGGTTCAG
Seq C2 exon
CTGCTCCTGCCCTCTGGGCTTCGAGGGGCAGCGGTGTGAGATCAACCCAGACGACTGCGAGGACAACGACTGCGAGAACAACGCCACCTGCGTGGACGGGGTCAACAACTACGTGTGTGTGTGCCCGCCAAACTACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'28-30,'28-28,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(87.5=60.9)
A:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
C2:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACAACGGCACATGCAG
R:
GTAGTTGTTGACCCCGTCCAC
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]