GgaEX1053910 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3980460-4003132:+
Coord C1 exon
chr13:3980460-3980584
Coord A exon
chr13:3996425-3996522
Coord C2 exon
chr13:4002993-4003132
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTTTCTCAAATAGGGT
3' ss Score
9.46
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AGCCGGTAGATATCAGCGTTGTGTCCAAGTGTAACCCCTGCCTCTCCAATCCATGTAAGAACAATGGGACATGCAGCAATGATCCAGTGGAGTTTTATCAGTGCACCTGCCCTTTTGGCTTCAAG
Seq A exon
GGTCGGGACTGCAGTGTGCCCATTAATTCTTGCATTCAAAATCCATGTCAGAATGGAGGGACCTGCCACCTCACCGAGGCAAATAAAGATGGATTCAG
Seq C2 exon
CTGTTCTTGCCCCCTTGGCTATGAGGGGGAGAGGTGTGAAATAAACCCAGATGACTGCGAAGATAATGACTGTGAGAATAACTCTACGTGTGTGGATGGGATCAACAACTATGTCTGTCTCTGTCCTCCTAATTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(87.5=66.7)
A:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
C2:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACATGCAGCAATGATCC
R:
GTTGATCCCATCCACACACGT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]