HsaEX6101120 @ hg38
Exon Skipping
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168696292-168708121:-
Coord C1 exon
chr5:168707976-168708121
Coord A exon
chr5:168700582-168700679
Coord C2 exon
chr5:168696292-168696431
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTTTTGCTCCTCAGGGC
3' ss Score
11.26
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TACTCTGGTTTTGCTGCCCAGGGCCAGTGGACATCAACATTGTGGCCAAATGCAATGCCTGCCTCTCCAGCCCGTGCAAGAATAACGGGACATGCACCCAGGACCCTGTGGAGCTGTACCGCTGTGCCTGCCCCTACAGCTACAAG
Seq A exon
GGCAAGGACTGCACTGTGCCCATCAACACCTGCATCCAGAACCCCTGTCAGCATGGAGGCACCTGCCACCTGAGTGACAGCCACAAGGATGGGTTCAG
Seq C2 exon
CTGCTCCTGCCCTCTGGGCTTTGAGGGGCAGCGGTGTGAGATCAACCCAGATGACTGTGAGGACAACGACTGCGAAAACAATGCCACCTGCGTGGACGGGATCAACAACTACGTGTGTATCTGTCCGCCTAACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-'60-85,'60-84,62-85
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(87.5=57.1)
A:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
C2:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
Main Skipping Isoform:
ENST00000332966fB26286
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCCGTGCAAGAATAAC
R:
CAGGTGGCATTGTTTTCGCAG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains