RnoEX6046868 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20477117-20489256:+
Coord C1 exon
chr10:20477117-20477241
Coord A exon
chr10:20483104-20483201
Coord C2 exon
chr10:20489117-20489256
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCATCTGATCCTCAGGGC
3' ss Score
8.81
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGCCAGTGGACATTAACATCGTGGCCAAGTGCAACGCCTGCCTCTCTAGCCCATGCAAGAACAACAGCACTTGCAGCCAGGATCCGGTGGAGCAGTACCGCTGTACCTGCCCTTACAGCTACAAG
Seq A exon
GGCAAGGACTGCACCGTGCCCATCAACACCTGCGTCCAGAACCCCTGTCAGCACGGAGGCACCTGTCACCTCAGTGAGAGCCACAGAGATGGGTTCAG
Seq C2 exon
CTGCTCCTGCCCCCTGGGCTTTGAGGGACAGCGGTGTGAGATCAACCCAGATGACTGTGAGGATAACGACTGTGAAAACAGCGCCACCTGTGTGGACGGGATCAACAACTACGCATGCGTGTGCCCGCCGAACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'27-32,'27-30,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=PU(64.7=66.7)
C2:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAACAACAGCACTTGCA
R:
GTTGTTGATCCCGTCCACACA
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]