BtaEX6075917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56529312-56539107:+
Coord C1 exon
chr20:56529312-56529419
Coord A exon
chr20:56537940-56538046
Coord C2 exon
chr20:56538874-56539107
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTCCTCCTGGGCAGGTG
3' ss Score
9.54
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCTGATGAGGAACGTGGCGCTGCCTGAGGACATCAGGGGCAAGTGCACGGCCCTGCTGCAGCTCTATGATGCCTCCAACAGTGAGTGGCAACTGGGGAAGACAAAG
Seq A exon
GTGTTCCTTCGTGAGTCCTTGGAGCAGAAACTGGAGAAGCGACGGGAAGAGGAGGTGACGCGGGCGGCCATGGTGATCCGGGCCCACGTCTTGGGCTACTTGGCAAG
Seq C2 exon
AAAGCAATACAAGAAGGTCCTTGATTGTGTAGTGATCATACAGAAGAACTACAGGGCCTTCCTCCTGAGGAGGAGATTTTTGCACCTGAAAAAAGCAGCTGTGGTTTTCCAGAAGCAACTCCGAGGTCAGATTGCCAGAAGAGTTTACAGACAACTGCTGGCAGAGAAACGAGCAGAGGAGGAAAAGAGGAAACGGGAAGAGGAAGAAAAGAGGAAACGGGAGGAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'40-36,'40-35,41-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
C2:
PF0061222=IQ=PD(19.0=5.1),PF0061222=IQ=WD(100=26.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAACTGGGGAAGACAAA
R:
CTCCTCCTCCCGTTTCCTCTT
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]