RnoEX0057144 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78034305-78037575:+
Coord C1 exon
chr2:78034305-78034419
Coord A exon
chr2:78036058-78036164
Coord C2 exon
chr2:78037348-78037575
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTATCCCCCTCGTGGACAGGTC
3' ss Score
8.64
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATATAAAGTGCTGATGAGGGACTTGGCTCTGCCTGAGGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGTTCTATGATGCTTCTAACAGCGAGTGGCAACTGGGGAAGACCAAG
Seq A exon
GTCTTCCTTCGGGAATCCTTGGAGCAGAAACTGGAGAAGAGGCGGGAAGAGGAGATTGACCGGGCAGCCATGGTCATCCGAGCTCACATCTTAGGCTACTTGGCACG
Seq C2 exon
AAAGCAATATAGAAAAGTCCTTTGTGGTGTGGTGACCATACAGAAGAATTACAGAGCTTTCCTCGCGAGGAAGAGATTTCTGCACCTGAAAAAGGCAGCCATCGTGTTCCAGAAGCAGCTCCGAGGACGGCTGGCACGCAAGGTTTACAGGCAGCTTTTGGCCGAGAAACGGGAGCTGGAGGAGAGGAAGAGGTTGGAGGAAGAGAAGAAGAGAGAGGAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'38-34,'38-33,39-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
PF0006316=Myosin_head=PD(0.7=8.3),PF0061222=IQ=PU(76.2=44.4)
C2:
PF0061222=IQ=PD(19.0=5.2),PF0061222=IQ=WD(100=26.0),PF0061222=IQ=WD(100=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGACATCCGAGGGAAGT
R:
GCCAAAAGCTGCCTGTAAACC
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]