MmuEX6052935 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25706073-25709565:+
Coord C1 exon
chr15:25706073-25706187
Coord A exon
chr15:25707836-25707942
Coord C2 exon
chr15:25709338-25709565
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTGTCCCCCTTGTGGACAGGTC
3' ss Score
8.82
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTATAAAGTGCTGATGAGGAACTTGGCCCTGCCTGACGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGGTCTATGACGCTTCTAACAGCGAGTGGCAGCTGGGGAAGACCAAG
Seq A exon
GTCTTCCTTCGAGAATCCTTGGAGCAGAAACTGGAAAAGAGGCGGGAAGAGGAGATTGACCGTGCGGCCATGGTGATCCGAGCTCACATCTTAGGCTACTTGGCACG
Seq C2 exon
AAAGCAATATAGAAAGGTCCTCTGTGGTGTGGTGACCATACAGAAGAATTACAGAGCTTTCCTTGCGAGGAAGAAATTTTTGCACCTGAAAAAGGCAGCCATCGTGTTCCAGAAGCAACTGCGAGGACAGCTGGCACGCAGGGTTTACAGGCAGCTGTTGGCTGAGAAACGGGAGCTGGAGGAAAAGAAGAGGCGGGAGGAAGAGAAGAAGAGAGAGGAAGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'34-35,'34-33,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(44.7=100)
A:
PF0006316=Myosin_head=PD(3.5=8.3),PF0061222=IQ=PU(76.2=44.4),PF060886=TLP-20=PU(11.2=38.9)
C2:
PF0006316=Myosin_head=PD(7.2=7.8),PF0061222=IQ=PD(19.0=5.2),PF0061222=IQ=WD(100=26.0),PF0061222=IQ=WD(100=27.3),PF117163=MDMPI_N=PU(50.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGTCTATGACGCTTC
R:
TCTTCCTCCCGCCTCTTCTTT
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: