DreEX0048530 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42779085-42780708:-
Coord C1 exon
chr2:42780594-42780708
Coord A exon
chr2:42779402-42779508
Coord C2 exon
chr2:42779085-42779309
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTTTTCATTTTGCAGGTG
3' ss Score
11.77
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTACTATGTGTTGATGAGGGCTTTGGCTTTGTCAGAGGACCTTAAGGGGCGGAGTCTCTTGCTGCTGCAGCTCTATGACAACAGCGGTGCTGAATGGCAGCTGGGAAAAAACAAA
Seq A exon
GTGTTTATGAGAGAGAGTTTGGAGCTGCGGTTAGAAAAACAAAGAGAAACAGAAGTTCTCAAAGCAGCATCAATTATCCAAGCTCATATACTGGGCTACAGAGCACG
Seq C2 exon
GAGGCAGTACAGACGCCTGTTGCTGTGCATTGTTGTCATTCAGAAAAATTACCGTGCTCTATATTGGCGCCGACGCTTTCAGACAATGCGATGGGCCACCGTCACCTTACAGAAGAGGCTCAGAGGTCAAAGGGCACGAAGGCTCTATGTTCACCTTTTAGAGGAGAAGAGGAAGAGGGAAGAGGAAGAAAGGAGACACAGAGAAGAACAGGAGGCACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'26-21,'26-20,27-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.171
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
C2:
PF0061222=IQ=PD(19.0=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGCTTTGGCTTTGTCAG
R:
GAACATAGAGCCTTCGTGCCC
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]