BtaEX6075921 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56462126-56463739:+
Coord C1 exon
chr20:56462126-56462218
Coord A exon
chr20:56462640-56462708
Coord C2 exon
chr20:56463657-56463739
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATTTTTTTTAGAAT
3' ss Score
8.85
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
AAACTTGGTCTCCTAGCCCTTATCAATGAAGAAAGCCATTTTCCTCAAGCCACTGATAGCACCTTATTGGAAAAGTTGCACAATCAGCATGCT
Seq A exon
AATAACCACTTTTACGTGAAGCCTAGAGTTGCAGTCAACAATTTTGGAGTGAAACACTATGCTGGAGAG
Seq C2 exon
GTTCAGTATGACGTGCGGGGCATCTTGGAGAAGAACAGGGATACCTTCAGGGACGATCTTCTCAACCTTCTGAGAGAAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'30-26,'30-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGGTCTCCTAGCCCTT
R:
CGGCTTTCTCTCAGAAGGTTGA
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]