DreEX0048526 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42792316-42795066:-
Coord C1 exon
chr2:42794974-42795066
Coord A exon
chr2:42793743-42793811
Coord C2 exon
chr2:42792316-42792398
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTCGTTTCATCAGAGA
3' ss Score
8.27
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AAGTTGGGTTTGCTCGCTCTTGTGAATGAGGAAAGTCATTTTCCTAAAGGCACTGATGGCACACTTCTAGAGAAACTCCACAGCCAACATTCT
Seq A exon
AGAAATCAGTTCTACATCAAACCTCGAGTTGCAGTTCATCAGTTTGGAATCAAGCACTACGCTGGAGAG
Seq C2 exon
GTCGTTTATGATGTCAGAGGAATCCTGGAGAAGAACAGAGACACTTTCAGAGATGATGTTCTCAACTTACTCAGGGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'19-15,'19-14,20-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGGGTTTGCTCGCTCTT
R:
TGCTCTCCCTGAGTAAGTTGAGA
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]