GgaEX1037952 @ galGal3
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77281483-77282632:+
Coord C1 exon
chr2:77281483-77281575
Coord A exon
chr2:77282305-77282373
Coord C2 exon
chr2:77282550-77282632
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCTCCAATTAGAAC
3' ss Score
9.16
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAACTTGGCCTGCTGGCACTCATCAATGAAGAAAGCCATTTCCCTCAGGCTACTGACTCCACTTTACTGGAGAAGCTGAATGCCCAGCATGCT
Seq A exon
AACAATCCTTTTTATGTAAAACCACGAGTTGCTGTTCACAACTTTGGAGTGAAGCACTATGCTGGGGAG
Seq C2 exon
GTCCAGTATGATGTCCGGGGGATCTTGGAGAAGAACAGAGATACATTCAGAGATGATCTCCTGAACTTGCTACGTGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGCACTCATCAATGA
R:
TGCTTTCACGTAGCAAGTTCAG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]