MmuEX0030417 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25737450-25739369:+
Coord C1 exon
chr15:25737450-25737542
Coord A exon
chr15:25737957-25738025
Coord C2 exon
chr15:25739287-25739369
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTAACATTAGAAT
3' ss Score
6.9
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAACTTGGCCTCCTCGCCTTGATCAATGAAGAGAGCCATTTTCCTCAAGCCACAGACAGCACTTTGTTGGAGAAGCTACACAGTCAGCATGCT
Seq A exon
AATAACCACTTTTATGTGAAACCCCGCGTTGCAGTCAACAATTTTGGCGTGAAGCATTATGCAGGAGAG
Seq C2 exon
GTGCAGTATGATGTCCGAGGCATCTTGGAAAAGAACAGAGACACATTCAGAGATGACCTTCTCAACCTGCTCAGGGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'29-26,'29-25,30-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCGCCTTGATCAATG
R:
CCTGAGCAGGTTGAGAAGGTC
Band lengths:
161-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types