BtaEX6076003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59536304-59544082:+
Coord C1 exon
chr20:59536304-59536519
Coord A exon
chr20:59540330-59540542
Coord C2 exon
chr20:59543930-59544082
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGCTAATGTCTCCATGGCAGGTG
3' ss Score
8.53
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGCCTGCCCACTTACGACAGTCCCGAGGTGTTTGGGCTGCACCCCAATGCGGACATCACCTACCAGAGCAAGCTGGCCAAGGACGTGCTGGACACCATCCTGGGCATCCAGCCCAAAGACAGCTCTGGCGGAGGGGATGAGACCCGGGAGGCCATGGTGGCCCGGCTGGCTGATGACATGCTGGAGAAGCTGCCCCCGGACTATGGTCCTTTTGAA
Seq A exon
GTGAAGGAGAGGCTGCAGATGATGGGGCCATTCCAGCCAATGAACATTTTCCTCAGACAGGAGATAGACAGGATGCAGAGGGTACTCACCCTGGTCCGAAGCACCCTGACCGAGCTGAAACTTGCCATTGATGGCACCATCATCATGAGTGAAAATCTACGAGATGCTCTGAATTGCATGTTTGATGCCAGGATTCCTGCTCGTTGGAAGAAA
Seq C2 exon
GCATCTTGGGTTTCAAGTACCTTGGGTTTCTGGTTTACTGAACTTATTGAAAGAAACTGCCAGTTTACCTCTTGGGTTTTCAATGACCGACCTCACTGCTTCTGGATGACGGGCTTTTTTAACCCTCAAGGATTTTTAACTGCAATGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'77-77,'77-76,78-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=FE(10.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGACAGTCCCGAGGTGTTT
R:
AGAAGCAGTGAGGTCGGTCAT
Band lengths:
307-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]