DreEX0027467 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9359754-9366444:+
Coord C1 exon
chr16:9359754-9359969
Coord A exon
chr16:9362582-9362794
Coord C2 exon
chr16:9366292-9366444
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCCTTCATTATTCCATCCAGGTT
3' ss Score
7.75
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GGTCTCCCAACATATGACACCCCTGAGGTATTTGGCCTCCACCCAAACGCAGACATCACTTACCAAAGCAAACTTGCCAAGGACGTGCTAGACACAATCCTGAGTATCCAACCAAAGGACAGCTCTACTGGAGGTGGGGAGACCAGGGAGGCCATTGTGGGTCGGCTAGCTGATGACATGTTGGAGAAACTGCCTCCAGATTTTGTTCCATTTGAG
Seq A exon
GTTAGAGAGAGACTGATGAGCATGGGTCCCCTTCAGCCCATGAACATATTTCTGCGGCAGGAGATTGATCGCATGCAGAGAGTTATTGTTCTGGTCAGGAACACGCTGAATGACCTGAAGCTTGCCATTGATGGAACCATCATTATGAGCGAGAACCTGCGAGATGCACTGGACTGCATGTACGATGCCCGGATACCTGCACGCTGGAAAAAG
Seq C2 exon
GCCTCTTGGGCTTCCACTACACTGGGGTTTTGGTTCACGGAGTTGCTGGAGCGGAACAGACAGTTCCACTCTTGGATTTTTGAGGGGCGACCTAACTGCTTTTGGATGACAGGCTTCTTCAACCCACAGGGCTTTCTGACAGCTATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'48-48,'48-47,49-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=FE(10.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATTTGGCCTCCACCCAA
R:
TCCAAAAGCAGTTAGGTCGCC
Band lengths:
297-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]