MmuEX6053023 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28381073-28388455:+
Coord C1 exon
chr15:28381073-28381288
Coord A exon
chr15:28382956-28383168
Coord C2 exon
chr15:28388303-28388455
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTGAATGTCTCCATGGAAGGTG
3' ss Score
4.19
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCTTGCCTGCCTATGACAGCCCAGAGGTGTTTGGGCTCCACCCCAATGCTGACATTACTTACCAGAGCAAGCTGGCCAAGGATGTGCTGGACACTATCCTGGGCATCCAGCCCAAGGACAGCTCCGGTGGAGGGGACGAGACACGGGAGGCTGTGGTGGCCCGCCTGGCTGATGATATGCTAGAGAAGCTTCCAGAAGATTATAGTCCTTTTGAA
Seq A exon
GTGAAGGAGAGATTGCAGAAGATGGGACCATTCCAGCCCATGAACATTTTCCTCAGGCAGGAGATTGACAGGATGCAGAGGGTACTCAGCCTTGTCCGTAGCACCCTGACTGAGCTGAAACTAGCTGTTGATGGCACCATTATCATGAGTGAAAATCTAAGAGATGCTCTGGATTGCATGTTTGATGCCAGAATCCCTGCTCGGTGGAAAAAG
Seq C2 exon
GCATCATGGGTGTCTAGTACCCTGGGCTTCTGGTTTACTGAACTTCTAGAAAGAAACTGCCAGTTCACCTCCTGGGTTTCCAATGGCAGACCCCACTGCTTTTGGATGACAGGTTTCTTTAACCCGCAGGGATTCTTAACTGCGATGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'74-75,'74-74,75-75=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=FE(10.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGTGTTTGGGCTCCAC
R:
GTCATCCAAAAGCAGTGGGGT
Band lengths:
304-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: