MmuEX6053023 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28451318-28458700:+
Coord C1 exon
chr15:28451318-28451533
Coord A exon
chr15:28453201-28453413
Coord C2 exon
chr15:28458548-28458700
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTGAATGTCTCCATGGAAGGTG
3' ss Score
4.19
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGCTTGCCTGCCTATGACAGCCCAGAGGTGTTTGGGCTCCACCCCAATGCTGACATTACTTACCAGAGCAAGCTGGCCAAGGATGTGCTGGACACTATCCTGGGCATCCAGCCCAAGGACAGCTCCGGTGGAGGGGACGAGACACGGGAGGCTGTGGTGGCCCGCCTGGCTGATGATATGCTAGAGAAGCTTCCAGAAGATTATAGTCCTTTTGAA
Seq A exon
GTGAAGGAGAGATTGCAGAAGATGGGACCATTCCAGCCCATGAACATTTTCCTCAGGCAGGAGATTGACAGGATGCAGAGGGTACTCAGCCTTGTCCGTAGCACCCTGACTGAGCTGAAACTAGCTGTTGATGGCACCATTATCATGAGTGAAAATCTAAGAGATGCTCTGGATTGCATGTTTGATGCCAGAATCCCTGCTCGGTGGAAAAAG
Seq C2 exon
GCATCATGGGTGTCTAGTACCCTGGGCTTCTGGTTTACTGAACTTCTAGAAAGAAACTGCCAGTTCACCTCCTGGGTTTCCAATGGCAGACCCCACTGCTTTTGGATGACAGGTTTCTTTAACCCGCAGGGATTCTTAACTGCGATGCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'81-80,'81-79,84-80=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=FE(10.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
ENSMUST00000067048fB8908
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGTGTTTGGGCTCCAC
R:
GTCATCCAAAAGCAGTGGGGT
Band lengths:
304-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types