BtaEX6076021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59437424-59451312:+
Coord C1 exon
chr20:59437424-59437622
Coord A exon
chr20:59440683-59440855
Coord C2 exon
chr20:59451182-59451312
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCCTAACCCCAGGTG
3' ss Score
10.76
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAACTGTTAAGGCTGTGGAAGCATGAGTGTAAACGAGTTATTGCTGATCGCTTCACGGCATCTGATGACGTGACCTGGTTTGATAAGACTTTAGTCAGCTTGGTGGAGGAGGAGTTTGGTGAAGAGAAAAAACTCTTGGTGGATTGTGGAACTGACACTTACTTTGTGGATTTCTTGAGGGATGCACCTGAAGCTACAG
Seq A exon
GTGAAACATCTGAGGAGGCTGATGCTGAGATGCCCAAAATTTATGAGCCTGTTGAATCTTTTGATCACCTGAAGGAGCGTTTGAATATGTTCTTGCAGCTCTATAACGAGAGCATCCGTGGTGCAGGCACGGACTTGGTGTTCTTTGCAGATGCCATGGTCCACTTGGTCAAG
Seq C2 exon
ATCTCACGTGTCATTCGTACTCCCCGGGGAAATGCCCTCCTGGTTGGGGTGGGCGGATCGGGGAAGCAGAGCTTAACAAGGTTGGCTTCATTCATCGCTGGCTACACTTCCTTCCAGATCACTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'52-53,'52-52,53-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.172 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(3.0=11.9)
A:
PF127802=AAA_8=PU(8.4=39.7)
C2:
PF127802=AAA_8=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGATGACGTGACCTGG
R:
TAGCCAGCGATGAATGAAGCC
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]