GgaEX6020574 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76665253-76670732:+
Coord C1 exon
chr2:76665253-76665448
Coord A exon
chr2:76668041-76668213
Coord C2 exon
chr2:76670602-76670732
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTGCGTGCTTTTTGTTCTAGGTG
3' ss Score
12.04
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTACTGATAAAATTGTGGAAGCATGAATGTAAGAGTGTTATTGCTGATCGTTTCACAAACTTGGAAGATGTAAAGTGGTTTGACACAACTGTGGCAAAACTCATTGAGGAGGAATTTGAAGGAAAGACAACTTCACTGAATCCTGAAATTGACGCATTCTTTGTTGACTTCCTAAGGGATGCACCTCAAAGAACTG
Seq A exon
GTGAAACATCAGAAGAAGTTGATTTAAGGATTCCCAAAATTTATGAACCTGTTTACTGCTTTCGTCAGCTACGGAATCGTTTAAATATGTTTTTACAAACATACAATGAGAATGTCCGTGGCACTGGAATGGACTTGGTTTTCTTTGAGGATGCTATGGTTCACTTAGTAAAG
Seq C2 exon
ATTTCTCGAGTGATTCGTACTCCTCGTGGAAATGCTCTTTTAGTTGGAGTTGGTGGCTCAGGAAAGCAGAGCTTGACAAGACTAGCATCATTCATAGCTGGCTATGATACATTCCAGATCATGTTAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'52-58,'52-57,53-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(3.0=12.1)
A:
PF127802=AAA_8=PU(8.4=39.7)
C2:
PF127802=AAA_8=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATCGTTTCACAAACTTGG
R:
TGCTAGTCTTGTCAAGCTCTGC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]