GgaEX6020574 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78571200-78576690:+
Coord C1 exon
chr2:78571200-78571395
Coord A exon
chr2:78573988-78574160
Coord C2 exon
chr2:78576560-78576690
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTGCGTGCTTTTTGTTCTAGGTG
3' ss Score
12.04
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTACTGATAAAATTGTGGAAGCATGAATGTAAGAGTGTTATTGCTGATCGTTTCACAAACTTGGAAGATGTAAAGTGGTTTGACACAACTGTGGCAAAACTCATTGAGGAGGAATTTGAAGGAAAGACAACTTCACTGAATCCTGAAATTGACGCATTCTTTGTTGACTTCCTAAGGGATGCACCTCAAAGAACTG
Seq A exon
GTGAAACATCAGAAGAAGTTGATTTAAGGATTCCCAAAATTTATGAACCTGTTTACTGCTTTCGTCAGCTACGGAATCGTTTAAATATGTTTTTACAAACATACAATGAGAATGTCCGTGGCACTGGAATGGACTTGGTTTTCTTTGAGGATGCTATGGTTCACTTAGTAAAG
Seq C2 exon
ATTTCTCGAGTGATTCGTACTCCTCGTGGAAATGCTCTTTTAGTTGGAGTTGGTGGCTCAGGAAAGCAGAGCTTGACAAGACTAGCATCATTCATAGCTGGCTATGATACATTCCAGATCATGTTAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'56-60,'56-59,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(3.0=12.1)
A:
PF127802=AAA_8=PU(8.4=39.7)
C2:
PF127802=AAA_8=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATCGTTTCACAAACTTGG
R:
TGCTAGTCTTGTCAAGCTCTGC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]