MmuEX6053046 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28300110-28308216:+
Coord C1 exon
chr15:28300110-28300308
Coord A exon
chr15:28301998-28302170
Coord C2 exon
chr15:28308086-28308216
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACTTATTGCTTCTTGCCAAGGTG
3' ss Score
4.88
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GAACTCCTCAGGCTGTGGAAGCATGAGTGTAAACGTGTGATAGCTGACCGCTTTAGCATGTCCAGCGATGTGACCTGGTTCGATAAGGCTGTTGTCAGTTTGGTAGAGGAGGAGTTTGGTGAAGAGAAAGCACCTGTAGTGGATTGTGGAGTTGATGCTTATTTTGTGGATTTCTTGAGGGATGCACCAGAAGCTACAG
Seq A exon
GTGAAACACCTGAGGAGGCTGATGCTGAAATGCCAAAGCTTTATGAGCCAATCGCATCCCTTAACCACCTGCGAGAGCGTCTGAGTGTGTTCCTGCAGCTCTATAACGAGAGCATCCGTGGCACTGGCATGGACATGGTGTTCTTCATAGATGCAATGGTTCACTTAGTCAAG
Seq C2 exon
ATCTCTCGAGTCATACGCACTCCTCGGGGAAATGCCCTTCTGGTTGGTGTGGGTGGATCAGGAAAGCAGAGCTTGACAAGGTTGGCTTCATTCATCGCTGGCTATACCTCTTTCCAGATCACTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.172 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(2.9=11.9)
A:
PF127802=AAA_8=PU(8.4=39.7)
C2:
PF127802=AAA_8=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGTGTGATAGCTGACCGC
R:
CCAACCTTGTCAAGCTCTGCT
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: