BtaEX6076031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59402781-59406046:+
Coord C1 exon
chr20:59402781-59402915
Coord A exon
chr20:59403762-59403869
Coord C2 exon
chr20:59405893-59406046
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTTTTCTTTTTGAGATT
3' ss Score
6.31
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCCATTATGACTTTGGTCTGCGTAATATTCTGTCAGTTCTGCGAACCCTGGGAGCAGCCAAGAGAGCCAACCCCACAGATACGGAGTCCACGATCGTCATGCGTGTGCTGCGAGATATGAATCTTTCCAAACTG
Seq A exon
ATTGATGAGGATGAACCTTTATTTTTGAGTTTGATTGAAGATCTCTTCCCAAATATTCTTCTGGACAAGGCGGGTTACCCTGAATTGGAAATGGCAATTAGTAGACAG
Seq C2 exon
GTTGAAGAAGCTGGTTTAATCAACCATCCTCCTTGGAAACTGAAAGTCATCCAGCTGTTTGAAACACAGAGAGTGCGGCATGGAATGATGACCCTAGGGCCAAGTGGGGCAGGGAAGACCACCTGCATCCATACCTTGATGAGAGCCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(17.5=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGTTCTGCGAACCCTG
R:
TGTCAGGGCTCTCATCAAGGT
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]