GgaEX6020585 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78551757-78555041:+
Coord C1 exon
chr2:78551757-78551891
Coord A exon
chr2:78552446-78552553
Coord C2 exon
chr2:78554888-78555041
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGACTTTTACTAGATT
3' ss Score
7.55
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGCATTATGATTTTGGTTTGCGGAATATATTGTCAGTGCTACGCACATTAGGAGCGGCAAAAAGAGCAAAGCCTACGGATACTGAGTCTACCATAGTTATGCGTGTGCTGAGAGACATGAACCTCTCTAAACTG
Seq A exon
ATTGATGAAGATGAACCCTTATTCCTGAGTTTAATTGAAGATCTGTTTCCAGATATCCATCTTGATAAAGAAAGCTATCCTGAACTGGAAGCTGCCATTGACAAACAG
Seq C2 exon
GTGGAGAATGCTGGACTTGTTTGTCATCCTCCTTGGAAACTGAAAGTTATCCAACTTTTTGAAACTCAAAGAGTAAGACATGGATTGATGACTTTAGGGCCCAGTGGTTCAGGAAAAACTGCTTGTATCCACACTTTGATGAAAGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'44-48,'44-47,45-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(17.5=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTATGATTTTGGTTTGCGGA
R:
TTTTTCCTGAACCACTGGGCC
Band lengths:
252-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]