DreEX6039507 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9241726-9243310:+
Coord C1 exon
chr16:9241726-9241860
Coord A exon
chr16:9242921-9243028
Coord C2 exon
chr16:9243157-9243310
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCCTGTTCTTTCAGATT
3' ss Score
11.8
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGCCTCCGCAATATTCTTTCTGTCCTGCGCACTCTTGGTGCTGCAAAACGAGCCAATCCTAATGACACAGAGTCCACAATTGTGATGAGAGTTCTGCGAGACATGAACCTGTCTAAACTG
Seq A exon
ATTGATGAGGACGAGCCATTGTTTCTAAGTTTAATTGAAGATCTTTTCCCTGGAATTCAGTTGGATAAAGCTGGTTACCCGGATCTGGAATCAGCTATAGACAAACAG
Seq C2 exon
GTGACTGAGGCTGGACTGATCAATCACCCACCGTGGAGGTTAAAGGTCATTCAGCTATATGAAACTCAAAGAGTTCGTCATGGAATGATGGCATTAGGACCCAGTGGAGCAGGAAAAACAACCTGCATCCATACCCTAATGAAGGCCATGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(17.5=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTGGTGCTGCAAAACGA
R:
CGGTCATGGCCTTCATTAGGG
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]