HsaEX6097381 @ hg38
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13820346-13824333:-
Coord C1 exon
chr5:13824199-13824333
Coord A exon
chr5:13823263-13823370
Coord C2 exon
chr5:13820346-13820499
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTTCTTTTTTTAGATT
3' ss Score
11.79
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTCATTATGACTTTGGCCTGCGTAACATTCTGTCAGTTCTTCGGACCTTGGGAGCAGCAAAAAGAGCCAATCCAATGGATACGGAGTCCACGATTGTCATGCGTGTACTACGGGACATGAATCTTTCTAAACTG
Seq A exon
ATTGATGAGGATGAACCCTTGTTTTTGAGTTTGATTGAAGATCTCTTTCCAAATATTCTTCTGGACAAGGCAGGTTACCCTGAACTGGAAGCAGCAATTAGTAGACAG
Seq C2 exon
GTTGAAGAAGCTGGTTTAATCAACCATCCTCCTTGGAAACTGAAGGTCATCCAGCTATTCGAAACGCAGAGAGTGCGACATGGGATGATGACTCTGGGGCCCAGTGGGGCTGGGAAGACCACCTGCATCCACACCTTGATGAGAGCCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'59-57,'59-56,60-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.3=53.3)
A:
NO
C2:
PF077289=AAA_5=PU(17.5=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGCGTAACATTCTGTCA
R:
GTGTGGATGCAGGTGGTCTTC
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains