BtaEX6076037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59377596-59380731:+
Coord C1 exon
chr20:59377596-59377808
Coord A exon
chr20:59378945-59379169
Coord C2 exon
chr20:59380559-59380731
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTTGTTTCCGTAAGGTT
3' ss Score
7.52
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATCTATGATCGCATTCTGTCAATTTCCTCTCGAGAGGGTGAGACAGTTGAATTGCATAAACCCGTGATGGCAGAGGGCAATGTGGAAGTTTGGCTTAATTCTCTCCTGGAGGAATCTCAGGCCTCATTACATCTTGTGATTCGCCAGGCAGCAGCAAATATTCAAGAAACAGGTTTCCAACTGATTGAATTTCTTTCTTCCTTCCCTGCTCAG
Seq A exon
GTTGGATTATTAGGAATTCAAATGATATGGACACGGGATTCAGAAGAGGCCCTTCGAAATGCCAAGTTTGATAAAAAAATCATGCAGAAAACCAATCAGTCTTTCCTGGAGCTACTGACCACGTTGATAGACATGACAACCAAGGACCTGAGCTCCGTGGAGCGAGTTAAATATGAGACTCTGATTACTATTCATGTGCACCAGCGAGATATCTTTGATGACCTG
Seq C2 exon
TGTCACATGCATATCAAGAGCCCTTCGGACTTTGAGTGGCTGAAACAGTGCAGGTTTTATTTTAACGAAGATTCTGACAAGATGATGGTTCACATCACAGACGTGCCATTCATCTACCAGAATGAATTTCTAGGCTGCACTGACAGGCTTGTCATAACACCGCTCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(13.1=76.1)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGGCAATGTGGAAGTT
R:
AGCGGTGTTATGACAAGCCTG
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]