GgaEX6020591 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78544307-78546901:+
Coord C1 exon
chr2:78544307-78544519
Coord A exon
chr2:78545239-78545463
Coord C2 exon
chr2:78546729-78546901
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACCATTTCATGTTTCCTAAGGTT
3' ss Score
8.45
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATATATGATCGTATATTGTCAGTTAGTTCACGAGAGGGTGAGACTATTGAGCTGAGAAGACCTGTAATGGCTGAAGGTAATGTGGAAGTTTGGCTCAACTCTCTGTTGAAGGAGTCCCAGCTGTCACTGCACCATGTTATTCGCCAGGCAGCTATGCATATCCAGGAAACTAGTTTCCAACTGATTGAATTTCTTTCTACCTACCCAGCCCAG
Seq A exon
GTTGGGTTGTTAGGGATCCAAATGATTTGGACAAGAGACTCAGAAGAAGCTTTGACTAACGCCAGGTATGATAAAAAAATTATGCGAAAGACAAACCAGTTTTTCCTGGATCTTCTAAACACATTGATTGATATGACAACAAAAGACCTTAACCCAGTCGAACGAATTAAATATGAGACATTAATCACTATTCATGTGCATCAGAGGGACATCTTTGATGGTCTG
Seq C2 exon
GTTTGCATGCATATTAAGAGTCCTACAGACTTCGAGTGGCTGAAACAGTGTAGATTTTATTTTAATGAAGACTCTGATAAAATGCTGATTAATATCACTGATGTGGGTTTTACATACCAGAATGAATTCTTGGGCTGTACTGACAGGCTTGTCATCACACCTCTTACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(13.1=76.1)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=32.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGTTTGGCTCAACTCT
R:
GAGGTGTGATGACAAGCCTGT
Band lengths:
296-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]