DreEX0027454 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9234467-9236899:+
Coord C1 exon
chr16:9234467-9234747
Coord A exon
chr16:9234825-9235049
Coord C2 exon
chr16:9236727-9236899
Length
225 bp
Sequences
Splice sites
3' ss Seq
TGCTGGTTTCTGGGCTTTAGGTT
3' ss Score
7.78
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTACTTATTTATGCTGATCATTGTGTCTGCTTTACAAAAAAATGTATAAACTCTGGCTTTGCATTCAGATGTATGATAAGATTCTGGCGATATCATCACGAGAGGGTGAAACCATTGAGCTAGACAAGCCAGTCATAGCGGAGGGCAATGTTGAGGTCTGGCTTAATGCGCTACTAAAGGAATCCCAGAGGTCTTTGCACCTCGTCATCCGTCAGGCTGCGCTTGCCATTCAAGACTCTGGCTTTGAGTTGATCGAATTTTTGGACTCATTTCCTGCACAG
Seq A exon
GTTGGTTTACTAGGTATCCAGATGATCTGGACAAAGGATTCGGAGGATGCTTTGAGCAATGCCAGATATGACCGGAAGATCATGAGCAAAACCAACCAGTTCTTTCTTGAGCTCCTCAACAATTTGATTGACATGACTACTAAGGACCTTGGAGCTGTTGAACGGACAAAGTATGAAACACTAATCACTATTCATGTACACCAGAGGGACATCTTTGATGATTTG
Seq C2 exon
TGTCGTTTGCACATCAAAAGCCCCACCGACTTTGAATGGCTGAAACAGTGCCGTTTTTACTTCAATGAGGACTCAGATAAGATGATGATCAACATCACTGATGTGGGCTTTGTGTACCAGAATGAGTTTCTAGGCTGCACTGACAGGCTGGTCATCACTCCCCTCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=WD(100=73.8)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATGTTGAGGTCTGGCTT
R:
AGTGAGGGGAGTGATGACCAG
Band lengths:
306-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]