HsaEX6097376 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13839465-13842013:-
Coord C1 exon
chr5:13841801-13842013
Coord A exon
chr5:13841015-13841239
Coord C2 exon
chr5:13839465-13839637
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTTATTTCCATAAGGTT
3' ss Score
7.06
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATCTATGATCGAATTCTGTCAATTTCCTCTCAAGAGGGTGAGACGATTGAATTGGATAAACCTGTCATGGCAGAGGGCAATGTGGAAGTTTGGCTTAATTCTCTTTTGGAAGAATCTCAGTCCTCATTGCATCTTGTGATTCGCCAGGCAGCCGCAAATATTCAAGAAACAGGTTTCCAACTAACTGAATTTCTTTCATCCTTCCCTGCTCAG
Seq A exon
GTTGGATTATTAGGAATTCAGATGATATGGACACGGGATTCAGAAGAAGCCCTTAGAAATGCCAAGTTTGATAAAAAAATCATGCAGAAAACTAATCAGGCTTTCCTGGAGCTACTCAATACATTGATAGACGTCACCACGAGGGATCTGAGTTCCACGGAACGAGTGAAATACGAGACTCTGATTACTATTCATGTGCACCAAAGGGATATCTTTGATGACCTG
Seq C2 exon
TGTCATATGCATATCAAGAGTCCCATGGACTTTGAGTGGCTGAAACAGTGCAGATTTTACTTTAACGAAGATTCTGACAAGATGATGATTCACATCACAGATGTGGCGTTCATATACCAGAATGAATTTTTAGGCTGCACTGACAGGCTTGTAATAACTCCACTTACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(13.1=76.1)
A:
NO
C2:
PF127742=AAA_6=PU(8.2=32.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGGCAATGTGGAAGTT
R:
TTACAAGCCTGTCAGTGCAGC
Band lengths:
298-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)