BtaEX6076051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59330129-59340237:+
Coord C1 exon
chr20:59330129-59330300
Coord A exon
chr20:59332945-59333090
Coord C2 exon
chr20:59340072-59340237
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTCTTATTTTTCTCCAAAGGGG
3' ss Score
8.45
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
ATGATGCTGGCTGAATATCAGAGGGTGAAGTCAAAAATGCCTGCCATCATAGAGCAACTGATGGTCCCTCATTTGGCGAAAGTGGATGAAGCTCTCCAGCCTGGCCTGGCTGCACTGACCTGGACATCACTGAACATTGAGATGTACTTGAAAAATGCTTTTGCAAAGATAA
Seq A exon
GGGACCTGGAGTTGCTGCTCGACAGGGTCAATGATTTGATCGAGTTCCGCATTGACGCCATCCTGGAAGAAATGAGCAGCACTCCTCTTTGTCAGCTCCCTGGGGAGGAGCCACTTACCTGCGAAGAGTTTCTCCAGATGACAAAG
Seq C2 exon
GACCTTTGTGTAAATGGTGCTCAGATACTACACTTTAAAAGCTCTTTAGTGGAGGAAGCAGTTAATGAGCTAATTAATATGTTGCTGGATGTGGAAGTTCCATCTAAGGAAGAAAGAGAGAAAGTATTCAATGTGAATAGTGATGATTGGAAAAATGAAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.107
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(8.9=86.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGTCAAAAATGCCTGCC
R:
GGAACTTCCACATCCAGCAACA
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]