MmuEX6053081 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28182177-28199210:+
Coord C1 exon
chr15:28182177-28182348
Coord A exon
chr15:28193307-28193452
Coord C2 exon
chr15:28199048-28199210
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCCAAAGAGG
3' ss Score
7.16
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATGATGCTGTCTGAATACGAGAGAGTGAAGTTGAAAATGCCTCCTGCCATCGAGCAGTTGATGTTTCCACACCTGGCTAGAGTGGATGAAGCCCTCCAGCCGGGCCTGGCTGTCCTGACTTGGACGTCCCTGAATATTGGGGGCTATTTAGAAAATGCCTTTGCAAAGATCA
Seq A exon
AGGACCTGGAGCTGCTGCTTGACCGGGTCAATGACTTGATTGAGTTCCGCATCCACGCCATCCTGGAGGAAATGAGTAGCATGGCTCTTTGTCAGCTCCCTCAGGATGACCCCCTGACTTGTGAAGAATTCCTCCAAATGACAAAG
Seq C2 exon
GATCTCTGTGTGAGTGGTGCGCAGCTACTCCATTTTAAAAGCTCCCTTGTGGAGGAAGCAGTCAATGAGCTAATAAACATGTTATTGGATGTGGATGTACCACCTGAAGAAGCAGCCGAAAACGTCTGCCATGAGAACGCCAGTCCTAGCGGTAACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.309
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(8.9=86.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCATCGAGCAGTTGATGT
R:
GGCTGCTTCTTCAGGTGGTAC
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: