RnoEX6009081 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80998041-81006878:+
Coord C1 exon
chr2:80998041-80998212
Coord A exon
chr2:81002118-81002263
Coord C2 exon
chr2:81006716-81006878
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGTTTTTCCCAAAGAGG
3' ss Score
5.65
5' ss Seq
AAGGTCATT
5' ss Score
4.32
Exon sequences
Seq C1 exon
ATGATGCTGTCTGAATACCAGAGAGTGAAGTTGAAAATGCCTCCTGCCATTGAGCAGTTGATGCTCCCGCACTTGGCGAGAGTGGATGAAGCCCTCCAGCCTGGCCTGGCTGTCCTGACTTGGACGTCCCTGAATATTGGAACCTATTTAGAAAATGCTTTTGAAAAGATCA
Seq A exon
AGGACCTGGAGCTGCTGCTTGACCGGATCAATGACTTGATTGAGTTCCGCATCCATGCCATCTTGGAGGAAATGAGCAGCGTGGCCCTTTGTCAGCTCCCTCAGGATGACCCCCTGACTTGTGAAGAATTCCTCCAAATGACAAAG
Seq C2 exon
GACCTTTGTGTGAATGGCGCTCAGAAACTCCATTTTAAAAGCTCCCTAGTGGAGGAAGCAGTAAATGAGCTAATAAACATGTTATTGGATGTGGACGTCCTACCTGAAGAAGCATCTGAAAAAGTCCGCCATGAGAATGCCAGTCCCAACGGGGACACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'16-19,'16-17,18-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.309
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(8.9=86.2)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000074689fB4260
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAAAATGCCTCCTGCCA
R:
TCAGGTAGGACGTCCACATCC
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]