GgaEX7002084 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76620656-76624664:+
Coord C1 exon
chr2:76620656-76620827
Coord A exon
chr2:76622274-76622419
Coord C2 exon
chr2:76624505-76624664
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTCTTGCCTCAAAAGCTG
3' ss Score
6.42
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
ATGATGCTAGCAGAGTATAAAAGAATTAAACTAAAAATACAACACCCTGTTGAACGATTGATAAGCCCTTGGTTAGCAAACATAGATGATGCTATCCAGACAGGTCTGATGTTACTGACCTGGACATCATTGAATATTGAGAAATATATTGATAAAATTTTTACCAAGCTAG
Seq A exon
CTGAACTGGAGTTATTGCTTGATAGAGTGAATGACTTGATTGAATTTCGTATTGATGCTGTCCTTCAAGAAATGAGTAGTGTGCCGCTCTGTATATTGCCAGAAGATGAACCATTGAGCTGTGAGGAATTTCTCCAAAAGACTAAG
Seq C2 exon
GAGCTCTGTATGAAAGGTTCCCAGACTTTACATTTTAAAAGCTCACTGGTGGAAGAAGCAGCTAATGAGCTGATTAACATGTTACTAGACACAGAAGTACAGGTCAAAAAAGATGAGAAGCCAGTTGTTCCCACTGGTGAAATAAAGGGAAAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'16-19,'16-18,17-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.259
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(8.9=86.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCTTGGTTAGCAAACAT
R:
CCAGTGGGAACAACTGGCTTC
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]