BtaEX6076664 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20840178-20844572:+
Coord C1 exon
chr21:20840178-20840305
Coord A exon
chr21:20841381-20841674
Coord C2 exon
chr21:20844357-20844572
Length
294 bp
Sequences
Splice sites
3' ss Seq
CCACCTGCCTCTACCCCCAGGGG
3' ss Score
10.87
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ATACCCCATTGTGAGCCCGCGGACCCCCTGTGTGGGTGACAAGGACAGCAGCCCGGGGGTCCGGACCTACGGCGTGCGGCCACCATCAGAAACCTACGATGTCTACTGCTACGTGGACAGACTCGAGG
Seq A exon
GGGAGGTGTTCTTCGCCACACGCCTGGAGCAGTTCACCTTCTGGGAAGCCCAGGAGTTCTGTGAATCCCAAAACGCCACTCTGGCCACCACAGGCCAGCTCTATGCTGCCTGGAGCCGTGGTCTGGACAAGTGCTACGCCGGCTGGCTGGCTGACGGCAGCCTCCGCTACCCCATCGTCACCCCAAGGCCCGCCTGTGGCGGGGACAAACCGGGCGTGAGAACCGTCTACCTCTACCCCAACCAGACGGGCCTCCTGGATCCGCTGTCCCGGCACCACGCCTTCTGCTTCCGAG
Seq C2 exon
GTGTTTCAGCGGCGCCCTCTCCAGAAGAAGAGGAGGGTAGTGCACCCACAGCAGGCCCTGACGTGGAGGAGTGGATGGTGACACAAGTGGGGCCTGGCGTGGCTGCTGTCCCCATCGGGGAGGAGACGACTGCAATCCCAGGCTTCACCGTTGAGCCAGAAAACAAGACGGAATGGGAACTTGCCTACACCCCAGCGGGCACTTTGCCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.000 C2=0.986
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGGTGACAAGGACAG
R:
GGGTGTAGGCAAGTTCCCATT
Band lengths:
293-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]