GgaEX6008105 @ galGal3
Exon Skipping
Gene
ENSGALG00000006725 | ACAN
Description
NA
Coordinates
chr10:14751360-14752570:-
Coord C1 exon
chr10:14752443-14752570
Coord A exon
chr10:14752034-14752327
Coord C2 exon
chr10:14751360-14751554
Length
294 bp
Sequences
Splice sites
3' ss Seq
TCTTATCTTTCGGCCCGCAGGTG
3' ss Score
11.83
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTATCCCATTGTGAATCCCCGCAGCAACTGTGTAGGAGACAAAGAGAGCTCCCCAGGTGTGCGGTCATACGGCATGCGCCCGGCCTCAGAGACCTACGATGTGTACTGTTACATCGACAGGCTAAAGG
Seq A exon
GTGAGGTGTTTTTTGCCACCCAGCCAGAGCAGTTCACCTTCCAAGAAGCCCAGCTGTACTGTGAAAGCCAAAATGCCACGCTGGCCTCTGCTGGGCAACTCCACGCTGCCTGGAAGCAGGGCCTGGATAGGTGCTACCCTGGGTGGCTGGCCGACGGCAGCTTGCGGTACCCCATTGTGAGCCCCCGACCTGCCTGCGGGGGGGATGCACCTGGTGTGAGGACCATCTACCAGCACCACAACCAGACGGGCTTTCCTGACCCTCTGTCACGGCATCACGCTTTCTGCTTCAGAG
Seq C2 exon
CTCTGCCATCCGTAGTGGAGGAGGGGGTGACCTCACTCTTTGAAGAAGAGGTGATGGTAACCCAACTGATCCCTGGAGTGGAAGGAATACCTTCTGGGGAGGAAACAACTGTGGAGACAGAGCTTTCCTCTGAGCCTGAGAATCAGACAGCCCAGGGAACGGAGGTCTTCCCAACTGACGTATCACTGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.101 C2=0.636
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCATTGTGAATCCCCGC
R:
TCAGTTGGGAAGACCTCCGTT
Band lengths:
305-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]