DreEX6102149 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19119094-19119759:-
Coord C1 exon
chr25:19119632-19119759
Coord A exon
chr25:19119248-19119541
Coord C2 exon
chr25:19119094-19119162
Length
294 bp
Sequences
Splice sites
3' ss Seq
GTTTGGTCTGTATCCTTTAGGAG
3' ss Score
8.22
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
ATATCCAATTGTGCATCCTCGAAAGAAATGCTCTGGAGATAGTGAGGATGTCCCTGGTGTACGCTCTTACAATGTTAGGCCTGCACATGAACAATATGATGTGTACTGTTACATGGATCAAATAAAGG
Seq A exon
GAGAGATCTTCCATGTGAGCTCACTAGCTGGCTTTACCTACTATGAAGCTGTTGCCCATTGCAGAAAACTGAGTTCTACTCTTGCCTCAACTGGAGAACTCTATGCAGCGTGGAATCAGGGTTTCCACAAGTGCAGCCCTGGATGGCTGGCTGACCGCAGTGTCCGCTACCCTGTACGTAGCCCAGACTTTGATTGTGGTGGAAACAAAACTGGAGTCCAGACAATTTATGCCCAACCAAACCAAACAGGCTCCCCACATCCATACTCAAGATATGATGCATACTGTTTTAAAG
Seq C2 exon
CAAATCTGTCTTTGGGGTTTGATGAAGATATGCTGAATGCTACAGACATAACAATGCTGCAGAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.081 C2=0.042
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCAATTGTGCATCCTCGA
R:
CAGGTCTCTGCAGCATTGTTA
Band lengths:
196-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]