MmuEX6011618 @ mm10
Exon Skipping
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:79092679-79096882:+
Coord C1 exon
chr7:79092679-79092806
Coord A exon
chr7:79093982-79094275
Coord C2 exon
chr7:79096667-79096882
Length
294 bp
Sequences
Splice sites
3' ss Seq
CCATTGCCTCTGTTCCCCAGGGG
3' ss Score
8.68
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATACCCCATTGTGAGCCCACGAACCCCATGTGTGGGTGACAAAGACAGCAGCCCAGGAGTCAGGACCTACGGCGTGCGCCCATCATCAGAAACCTATGATGTCTACTGCTACGTGGACAAGCTTGAGG
Seq A exon
GGGAAGTGTTCTTCGCCACACGCCTCGAGCAGTTCACCTTCCAGGAAGCGCGGGCCTTCTGTGCGGCTCAAAATGCCACCCTGGCCTCCACCGGCCAGCTCTATGCTGCCTGGAGCCAGGGTCTGGACAAGTGCTATGCTGGCTGGCTGGCAGATGGCACCCTCCGATACCCCATCATCACCCCTCGGCCTGCCTGTGGTGGGGACAAACCTGGCGTGAGAACTGTCTACCTCTACCCCAACCAAACCGGCCTCCCTGACCCACTGTCAAAGCACCATGCCTTCTGCTTCCGAG
Seq C2 exon
GTGTGTCAGTGGCGCCCTCTCCAGGAGAAGAAGGGGGTAGTACACCCACATCACCCTCTGACATAGAGGACTGGATCGTCACTCAGGTGGGGCCTGGTGTGGATGCTGTCCCCTTGGAGCCAAAGACAACAGAAGTGCCATATTTCACCACTGAGCCAAGAAAACAGACTGAATGGGAGCCAGCCTACACCCCAGTGGGCACATCCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-'7-16,'7-8,12-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.020 C2=0.932
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTGTGGGTGACAAAGACA
R:
TGTAGGCTGGCTCCCATTCAG
Band lengths:
292-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types