RnoEX6003368 @ rn6
Exon Skipping
Gene
ENSRNOG00000028992 | Acan
Description
aggrecan [Source:RGD Symbol;Acc:68358]
Coordinates
chr1:140802972-140807239:+
Coord C1 exon
chr1:140802972-140803099
Coord A exon
chr1:140804263-140804556
Coord C2 exon
chr1:140807036-140807239
Length
294 bp
Sequences
Splice sites
3' ss Seq
GCCATTGCCTCTGTCCCCAGGGG
3' ss Score
10.85
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATACCCCATTGTGAGCCCACGGACCCCATGTGTGGGTGACAAGGACAGCAGCCCCGGAGTCAGGACCTATGGCGTGCGCCCATCATCAGAAACCTATGATGTCTACTGCTACGTGGACAAGCTTGAGG
Seq A exon
GGGAAGTGTTCTTCGCCACACAAATGGAGCAGTTCACCTTCCAGGAAGCTCAGGCCTTCTGTGCAGCTCAAAATGCTACCCTGGCCTCCACTGGCCAGCTCTACGCTGCCTGGAGCCAGGGCCTGGACAAGTGCTATGCTGGCTGGTTGGCAGATGGCACCCTCCGATACCCCATCGTCAACCCTCGGCCTGCCTGTGGTGGTGACAAGCCGGGCGTGAGAACTGTCTACCTCTACCCCAACCAGACCGGCCTCCCTGATCCACTGTCCAAGCACCATGCCTTCTGCTTCCGAG
Seq C2 exon
GTGTGTCAGTGGCGCCCTCTCCAGGTGGTACACCCACATCGCCCTCTGACATAGAGGACTGGATCGTCACTCGAGTGGAGCCTGGCGTGGATGCTGTCCCCTTGGAGCCGGAGACGACAGAAGTACCATATTTCACCACTGAGCCAGAAAAACAGACTGAATGGGAGCCAGCCTACACCCCAGTGGGCACATCCCCATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028992-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.030 C2=0.913
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(38.5=84.1),PF0019312=Xlink=PU(0.1=0.0)
A:
PF0019312=Xlink=WD(100=98.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCCCATTGTGAGCCCACG
R:
TAGGCTGGCTCCCATTCAGTC
Band lengths:
303-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]