BtaEX6076819 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014093 | IDH2
Description
Bos taurus isocitrate dehydrogenase 2 (NADP+), mitochondrial (IDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_175790]
Coordinates
chr21:21909328-21911627:-
Coord C1 exon
chr21:21911536-21911627
Coord A exon
chr21:21909981-21910146
Coord C2 exon
chr21:21909328-21909488
Length
166 bp
Sequences
Splice sites
3' ss Seq
CCCTGGCTGTCTGTTTCTAGCTC
3' ss Score
9.37
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATGCCGACAAGAGGATCAAGGTGGCGAAGCCAGTGGTGGAGATGGACGGCGATGAGATGACCCGTATTATCTGGCAGTTCATCAAAGAGAAG
Seq A exon
CTCATCCTGCCCCACGTGGACGTCCAGCTCAAGTATTTCGACCTGGGGCTCCCGAACCGTGACCAGACCAATGATCAGGTCACCATCGACTCCGCGTTGGCCACCCAGAAGTACAGTGTGGCTGTGAAGTGTGCCACCATCACCCCCGACGAGGCCCGTGTGGAAG
Seq C2 exon
AGTTCAAGCTGAAGAAGATGTGGAAGAGCCCCAATGGAACCATCCGGAACATCCTCGGGGGAACGGTCTTCCGGGAGCCCATCATCTGTAAGAACATCCCGCGTCTCGTCCCTGGCTGGACCAAGCCCATCACCATTGGCAGGCATGCCCACGGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014093-'6-4,'6-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=PU(6.0=77.4)
A:
PF0018015=Iso_dh=FE(13.9=100)
C2:
PF0018015=Iso_dh=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAAGAGGATCAAGGTGGC
R:
ATGCCTGCCAATGGTGATGG
Band lengths:
234-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]