GgaEX1029485 @ galGal4
Exon Skipping
Gene
ENSGALG00000022565 | IDH2
Description
isocitrate dehydrogenase [Source:RefSeq peptide;Acc:NP_001026770]
Coordinates
chr10:19521330-19522113:-
Coord C1 exon
chr10:19522022-19522113
Coord A exon
chr10:19521675-19521840
Coord C2 exon
chr10:19521330-19521490
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCCTCCCCCCGCAGCTG
3' ss Score
10.65
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
ATGCCGACAGGCGGATCAAAGTGGCCAACCCGGTGGTGGAGATGGACGGCGACGAGATGACACGCATCATCTGGGCCTTCATCAAGGAGAAG
Seq A exon
CTGATCCTGCCCAACGTGGACGTGCAGCTGAAGTATTTTGACCTGGGGCTGCCGCACCGGGACAAGACGGATGACCAGGTCACCATCGACTCGGCGCTGGCCACCAAGAAGTACAGCGTGGCCGTCAAGTGTGCCACCATCACACCCGATGAGGCCAGGGTGGAAG
Seq C2 exon
AGTTCAAACTGAAGAAGATGTGGAAGAGCCCCAACGGGACGATCCGGAACATCCTCGGCGGGACGGTGTTCCGGGAGCCCATCATCTGCAAGAACATCCCGCGCCTGGTGCCGGGCTGGACGCAGCCCATCACTATAGGCAGGCACGCCCACGGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022565-'1-7,'1-5,2-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=PU(6.0=77.4)
A:
PF0018015=Iso_dh=FE(13.9=100)
C2:
PF0018015=Iso_dh=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGGCGGATCAAAGTGG
R:
GCGTGCCTGCCTATAGTGATG
Band lengths:
236-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]