RnoEX0043138 @ rn6
Exon Skipping
Gene
ENSRNOG00000013949 | Idh2
Description
isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [Source:RGD Symbol;Acc:1597139]
Coordinates
chr1:141878553-141883033:-
Coord C1 exon
chr1:141882942-141883033
Coord A exon
chr1:141880296-141880461
Coord C2 exon
chr1:141878553-141878713
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTCCGGCTTTCTTCTCTAGCTC
3' ss Score
9.27
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGCTGAGAAGAGAATCAAGGTGGAGAAGCCGGTGGTGGAGATGGATGGCGATGAGATGACCCGGATCATCTGGCAGTTCATCAAGGAGAAG
Seq A exon
CTCATCCTGCCTCACGTGGATGTCCAGCTCAAGTATTTTGACCTTGGGCTTCCAAACCGTGACCAGACCAATGACCAGGTCACCATCGACTCTGCGCTGGCCACTCAGAAGTACAGTGTGGCTGTTAAGTGTGCTACAATCACCCCCGATGAGGCCCGTGTGGAAG
Seq C2 exon
AGTTCAAGCTGAAGAAAATGTGGAAGAGCCCTAACGGAACTATCCGTAACATCCTTGGGGGAACGGTCTTCAGAGAGCCAATTATCTGCAAAAATATCCCCCGCCTTGTCCCTGGCTGGACCAAGCCCATCACCATTGGCAGACACGCCCATGGCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013949-'9-8,'9-3,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=PU(6.0=77.4)
A:
PF0018015=Iso_dh=FE(13.9=100)
C2:
PF0018015=Iso_dh=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGAAGAGAATCAAGGTGG
R:
ATGGGCGTGTCTGCCAATG
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]