BtaEX6076835 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:22030474-22032980:+
Coord C1 exon
chr21:22030474-22030637
Coord A exon
chr21:22030848-22030910
Coord C2 exon
chr21:22032882-22032980
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTCTGGTTCCCCAGCTG
3' ss Score
8.96
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCTCTGAAAAGCGACCATTCCTCAGATTTGAAGCTGAAAACGTCTTCAACTACACATCCTTCCTGCTGAGCAAGGATGGCAGGACTGTGTACGTGGGCGCTCGAGAGGCCCTCTTGGCACTCAACAGCAGCGTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
Seq A exon
CTGCTGTGGCGCGCAGATGCAGAGAGAAAAAAGCAGTGCAGTTTCAAGGGCAAAAACCCAGAG
Seq C2 exon
CGGGACTGTCAAAACTACATCAAGATTCTCCTGCCACTCAACAGCAGCCACTTGATCGCCTGTGGCACGGAGGCCTTCAGCCCTGCGTGCACCTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(16.8=67.3)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAGGACTGTGTACGTG
R:
TCAAGTGGCTGCTGTTGAGTG
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]