RnoEX0079311 @ rn6
Exon Skipping
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:142000627-142003631:+
Coord C1 exon
chr1:142000627-142000790
Coord A exon
chr1:142001062-142001124
Coord C2 exon
chr1:142003533-142003631
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTCCTTCCCCAGCTG
3' ss Score
11.14
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAAGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCCCTTAACAGCAACCTCAGCTTCTTGCCGGGCGGGGAGTACCAAGAG
Seq A exon
CTGCTGTGGAGTGCAGATCCTGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCAAAG
Seq C2 exon
CGTGACTGTCAAAACTACATCAAGATCCTTCTGCCCCTCAACAGCAGCCATCTGCTCACCTGTGGCACCGCAGCCTTCAGCCCCCTGTGTGCTTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.4=67.3)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAGACGCTGTATGTGG
R:
TGTTGAGGGGCAGAAGGATCT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]