GgaEX1051639 @ galGal4
Exon Skipping
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19531314-19531998:+
Coord C1 exon
chr10:19531314-19531474
Coord A exon
chr10:19531746-19531808
Coord C2 exon
chr10:19531900-19531998
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACCATCCCCTCTCTGCAGCTG
3' ss Score
11.04
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTCAGCTGAGCGTGTGGTGCAGCGCTTCGAGGTGCCCGGGGTCTCCAACTACACGGCGCTGCTGCTGAGCCCGGATGGTGGCACGCTGTACCTGGGTGCACGTGAGGTGCTCTTTGCTGTCAACACCAGCCACTTCCAGCACGGCGTGCTGGCCCGCAGG
Seq A exon
CTGCCTTGGGGTGCGGATGAGGAGAAGAAGAGGCAGTGCGTGTTCAAGGGCAAGGACCCCCAG
Seq C2 exon
AGGGACTGTCACAACTACATCAAGATGCTGCTGCAGCTGAACAGCACCCACCTCTACACGTGCGGGACCTGTGCCTTCAGCCCCACCTGCGCCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'14-4,'14-3,15-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.2=66.7)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCTGGGTGCACGTGAG
R:
TGTAGAGGTGGGTGCTGTTCA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]