HsaEX0057098 @ hg38
Exon Skipping
Gene
ENSG00000185033 | SEMA4B
Description
semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr15:90217439-90219891:+
Coord C1 exon
chr15:90217439-90217602
Coord A exon
chr15:90217767-90217829
Coord C2 exon
chr15:90219793-90219891
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTCTCATTCCCCAGCTG
3' ss Score
10.63
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTCTGAAGAGCGGCCATTCCTCAGATTCGAAGCTGAACACATCTCCAACTACACAGCCCTTCTGCTGAGCAGGGATGGCAGGACCCTGTACGTGGGTGCTCGAGAGGCCCTCTTTGCACTCAGTAGCAACCTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
Seq A exon
CTGCTTTGGGGTGCAGACGCAGAGAAGAAACAGCAGTGCAGCTTCAAGGGCAAGGACCCACAG
Seq C2 exon
CGCGACTGTCAAAACTACATCAAGATCCTCCTGCCGCTCAGCGGCAGTCACCTGTTCACCTGTGGCACAGCAGCCTTCAGCCCCATGTGTACCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.338 C2=0.130
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(71.2=67.3)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCAGTAGCAACCTCAGC
R:
TGTAGGTACACATGGGGCTGA
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development