DreEX0065087 @ danRer10
Exon Skipping
Gene
ENSDARG00000074414 | sema4ba
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba [Source:ZFIN;Acc:ZDB-GENE-070705-31]
Coordinates
chr18:25828870-25838594:-
Coord C1 exon
chr18:25838434-25838594
Coord A exon
chr18:25833770-25833832
Coord C2 exon
chr18:25828870-25828968
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGACTTTTCACTATTTCAGTTA
3' ss Score
8.97
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAAC
Seq A exon
TTAACGTGGAGCACGCCGCAGAGAAAAAGAGATGAATGCAGTTTCAAAGGGAAGGACTTAAAG
Seq C2 exon
ACGGACTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCATCTGTACGTGTGTGGAACGTATGCCTTCAGTCCAATCTGCACATACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074414-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.1=66.7)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGAGAGACTCTCTTCGCA
R:
AAGGCATACGTTCCACACACG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]